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Table 1 Summary table of reported CASK variants

From: A de novo variant in CASK gene causing intellectual disability and brain hypoplasia: a case report and literature review

Publication

No

Sex

Age

POP

LOC

Variant

AAC

TOV

Geno

Phenotype

Juliane Najm et.al. (2008) [21]

1

F

-

-

-

-

-

-

-

MICPCH, ID, deafness

2

F

-

-

-

-

-

-

-

MICPCH, ID

3

F

-

-

-

-

-

-

-

MICPCH, ID

4

F

-

-

Ex21

c.1915C > T

p.(R639*)

Non

Hete

MICPCH, ID

5

M

-

-

Ex9

c.915G > A

p. = 

Spl

-

MICPCH, ID

Shin Hayashi, et al. (2008) [24]

6

F

5y

-

-

arrXp11.4p11.3 (41,500,243–45,480,187) × 1

-

-

-

MICPCH, DD, strabismus, nystagmus

Giulio Piluso et al. (2009) [3]

7

M

-

Ita

Ex2

c.83G > T

p. (R28L)

Mis

Hemi

FG, ID, hypotonia

Patrick S Tarpey et al. (2009) [25]

8

M

-

-

-

c.829C > T

p.(Y268H)

Mis

-

ID

9

-

-

-

Ex22

c.2129A > G

p.(D710G)

Mis

-

ID, nystagmus

10

-

-

-

-

c.2767C > T

p.(W914R)

Mis

-

ID, nystagmus

11

-

-

-

-

c.1188C > T

p.(P396S)

Mis

-

ID

Anna Hackett et al. (2010) [4]

12

M

-

-

Ex22

c.2129A > G

p.(D710G)

Mis

-

ID, nystagmus, strabismus

13

M

-

-

Ex27

c.2756 T > C

p.(W919R)

Mis

-

ID, nystagmus, epilepsy

14

M

-

-

Ex8

c.802 T > C

p. (Y268H)

Mis

-

ID, epilepsy

15

M

-

A-A

Ex13

c.1186C > T

p.(P396S)

Mis

-

ID, unsteady gait, resting tremor

16

M

-

-

Ex23

c.2183A > G

p.(Y728C)

Mis

-

ID, cerebellar hypoplasia

17

M

-

-

Ex26

c.2521-2A > T

p.(841_868 and p.841_843 del ALK)

Mis

-

ID, nystagmus

Ute Moog et al. (2011) [22]

18

F

10 m

Fre

In2

c.173-2A > C

-

Frs

-

ID, small nose, micrognathia,

19

F

10 m

Fre

Ex3

c.174 T > A

p.(D58E)

-

-

ID, small nose, micrognathia,

20

F

5y

Bri

In8

c.831 + 2 T > G

-

Frs

-

ID, epilepsy, BCH

21

F

2y

10 m

Fre

In17

c.1668 + 1G > A

-

Spl

-

BCH, hypotonia, small nose

22

F

4y

Ame

Ex5

c.379C > T

p.(E127*)

-

-

Axial hypotonia, peripheral hypertonia,

23

F

8y

Ame

Ex17

c.1639C > T

p.(Q547*)

-

-

BCH, hypertonia, strabismus

24

F

2y4m

Ame

In5

c.430–2 A > T

-

Spl

-

BCH, hypertonia, dyskinesia

Jun-ichi Takanashi et al. (2012) [26]

25

F

7y

Jap

-

c.173_173 + 1delGG

-

-

-

MICPCH, DD

26

F

11y

Jap

-

c.2302 + 1 del T

-

-

-

MICPCH, DD

27

F

8y

Jap

-

c.1910G > A

p.(G637D)

-

-

MICPCH, DD

28

M

2y

Jap

-

c.1061 T > C

p.(L348P)

-

-

MICPCH, DD, epilepsy

29

F

24y

Jap

Ex4

c.316C > G

p. (R106 *)

-

-

MICPCH, DD, epilepsy

Lydie Burglen et al. (2012) [27]

30

F

7y

-

Ex1-8

Xp11.4 deletion 0.3 Mb

-

-

-

PCH, ID, DD, FD, spasticity

31

F

3y

-

Ex 1–27

Xp11.3-p11.4 deletion 3 Mb

-

-

-

ID, DD, deafness, FD, spasticity

32

F

14y

-

Ex1

Xp11.4 deletion 0.5 Mb

-

-

-

ID, DD, FD spasticity

33

F

13y

-

Ex21

c.1968G > A

p.(W656*)

Non

-

ID, DD, FD, epilepsy

34

F

3y

-

In21

c.2040–2 A > G

-

Spl

-

ID, DD, deafness spasticity

35

F

1y

-

Ex22

c.2080C > T

p.(Q694*)

Non

-

ID, DD, FD

36

F

1y

-

Ex22

c.2074C > T

p.(Q692*)

Non

-

ID, DD, epilepsy

37

F

10y

-

In24

c.2302 + 5G > A

-

Spl

-

ID, DD, deafness, epilepsy,

38

F

14y

-

In21

c.2039 + 1G > T

-

Spl

-

ID, DD, FD, spasticity,

39

F

8y

-

Ex21

c.1970G > A

p.(W657*)

Non

-

ID, DD, FD, stereotypies

40

F

3y 6 m

-

Ex15

c.1501dupA

p.(M501fs)

Frs

-

ID, DD, FD,

stereotypies

41

M

15y

-

Ex4

c.[= /316C > T]

p.(R106*)mos

Non

-

ID, DD, FD, stereotypies

42

M

13y

-

In3

c.278 + 1G > A

-

Spl

-

ID, DD, FD, epilepsy

Vassili Valayannopoulos,et al. (2012) [28

43

F

13y

-

-

c.1970G > A

p.(W657*)

-

-

MICPCH, trunk ataxia, swallowing difficulties

44

F

8y

-

Ex16

c.1577delG

p.(R526Sfs-X74)

Frs

-

MICPCH, trunk ataxia, dystonia, spasticity

45

 

13y

-

Ex21

c.1968G > A

p.(W656*)

-

-

MICPCH, dystonia, swallowing difficulties

Hirotomo Saitsu, et al. (2012) [29]

46

M

4y

-

Ex2

(NG_016754.1: g.17883_129055del

deletion 111 Mb

-

-

MICPCH, OS, micropenis

47

M

4y

-

Ex1

c.1A > G

p.(M1V)

-

Hemi

MICPCH, OS,

Shin Hayashi et al. (2012) [5]

48

F

2y 8 m

Jap

Ex2

c.79C > T

p.(R27*)

Non

-

ID, DD, deafness, microcephaly, hypotonia

49

F

2y

Jap

-

c.316C > T

p.(R106*)

Non

-

ID., deafness, microcephaly, hypotonia

50

F

2y 8 m

Jap

Ex27

c.2632C > T

p.(Q878*)

Non

-

ID, hyperopia microcephaly

51

F

11 m

Jap

Ex3

c.243_244delTA

p.(Y81*)

Frs

-

microcephaly, ID

52

F

7y

9 m

Jap

In4

c.357-1G > A

p.S119Rfs7X, p.H120Rfs22X

Spl

-

microcephaly, ID

53

F

14y

Jap

-

c.2041-1G > C

p.W608Cfs29X,

p.W608Cfs3X

Spl

-

Microcephaly, ID

54

F

1y 9 m

Jap

-

arrXp11.4p11.3 (41,009,876–44,100,501) × 1

-

-

-

MICPCH, DD, deafness, hypotonia

55

F

2y

Jap

-

arrXp11.4p11.3 (41,337,795–42,468,013) × 1

-

-

-

MICPCH, DD

56

F

12y

Jap

-

arrXp11.4 (41,405,593–41,570,391) × 3

-

-

-

MICPCH, DD, epilepsy, strabismus

57

F

2 m

Jap

-

arrXp11.4 (41,382,179–41,540,922) × 3 arrXp11.22 (56,012,908–56,275,153) × 3

-

-

-

MICPCH, DD, epilepsy, hypotonia, strabismus

Nakamura K. et al. (2014) [23]

58

M

-

-

Ex3

c.227_228del

p.(E76Vfs*6)

Frs

Hemi

PCH, TOF, epilepsy

JacquesL. Michaud et al. (2014) [30]

59

F

36 m

-

Ex2

c.82C > T

p.(R28*)

-

-

ID, cortical and cerebellar atrophy

Ute Moog et al. (2015) [31]

60

M

7 m

-

Ex7

c.704_708del

p.(K236Efs* 10ex7dn)

Frs

-

MICPCH, ID, DD, epilepsy, hypotonia

61

M

10 m

-

-

dup ex10 – 16dn

-

-

-

MICPCH, ID, DD, epilepsy, hypotonia

62

M

5y

-

-

c.1A > G ex1dn

-

-

-

MICPCH, ID, DD, epilepsy, hypotonia

63

M

15 m

-

-

c.79C > T

p.(R27*ex2 dn)

-

-

MICPCH, ID, DD, epilepsy, hypotonia

64

M

7 m

-

-

dup ex4–20 mos

-

-

-

MICPCH, ID, DD, epilepsy, hypertonia

65

M

16 m

-

-

del ex1mos

-

-

-

MICPCH, ID, DD, hypertonia

66

M

29 m

-

-

del ex3–9 mos

-

-

-

MICPCH, ID, DD

67

M

20 m

-

-

dup ex1–5 mat

-

-

-

Microcephaly, DD

Tomoshi Nakajiri et al. (2015) [32]

68

F

13y

Jap

Ex21

c.1896dupC

p.(C633Lfs*2)

Frs

Hete

MICPCH, epilepsy

Patrick Rump et al. (2016) [33]

69

F

22y

-

-

c.2302 + 2 T > G

-

-

Hete

MICPCH, ID, DD, FD, epilepsy

Lucía Rivas et al. (2017) [34]

70

F

5y

-

-

deletion254.01 Kb

-

-

-

MICPCH, WS

Shin Hayashi et al. (2017) [35]

71

F

1y

-

-

c.868G > T

p.(E290*)

-

-

MICPCH, DD

72

F

5 m

-

-

c.761-762delCT

p.(S246*)

-

-

MICPCH, hypotonia

73

F

15y

-

-

c.1006-1012del ACCTCCT

p.(T336Qfs* 23)

-

-

MICPCH, epilepsy, DD, hypotonia

74

F

4y2m

-

-

c.2103delT

p.(F710Lfs* 26)

-

-

MICPCH, DD

75

F

1y

-

-

c.1677dupG

p.(R560Afs* 20)

-

-

MICPCH, DD

76

F

17y

-

-

c.2508delT

p.(L837*)

-

-

MICPCH, DD, epilepsy

77

F

11y

-

-

c.1896dupC

p.(C633Lfs*2)

-

-

MICPCH, epilepsy DD, hypertonia

78

F

1y

-

-

c.1582 + G > A

-

-

-

MICPCH, DD

79

F

3y

-

-

c.2302 + 1G > T

-

-

-

MICPCH

80

M

4y 4 m

-

-

c.317G > C

p.(R106P)

-

-

MICPCH

81

M

2y

-

-

c.[= /1493_1503 + 10delATGAACCAATGGTAAGTAGGAinsGG]

p.(D498Gfs* 12)

-

-

MICPCH, epilepsy DD, hypotonia

82

F

6y4m

-

-

arrXp11.4p11.3 (41,618,898–43,755,475) × 1

-

-

-

MICPCH, DD, epilepsy

83

F

4y

-

-

arrXp11.4p11.3 (41,145,925–46,090,321) × 1

-

-

-

MICPCH,

84

F

12y8m

-

-

arrXp11.4p11.3 (41,163,139–44,592,980) × 1

-

-

-

MICPCH, DD, glaucoma, PHPV

85

F

-

-

-

arrXp11.4 (41,442,660–41,527,850) × 3

-

-

-

Died

Bernt Popp et al. (2017) [36]

86

F

5y

Ger

Ex2

c.68del

p.(F23Sfs*18)

Frs

-

MICPCH, deafness, ID hypertonia

Stephanie C. DeLuca et al. (2017) [37]

87

F

54 m

-

-

c.2221 + 1G > C

-

-

-

MICPCH, single- word speech

88

F

89 m

-

Ex17

c.1609C > T

p.(R537*)

-

-

MICPCH

89

F

24 m

-

-

c.106C > T

p.(Q36*)

-

-

MICPCH, DD

P. Dunn, et al. (2017) [38]

90

M

6y 6 m

-

Ex26

c.2521–2 A > G

-

-

-

FG, nystagmus

Toshiyuki Seto et al. (2017) [39]

91

M

5y

-

Ex15

c.1424G > T

p.(S475I)

Mis

-

microcephaly, ASD

92

F

3y

-

-

c.1424G > T

p.(S475I)

Mis

-

DD, ASD

Babylakshmi Muthusamy et al. (2017) [40]

93

M

14y & 17y

Ind

-

E550_dup

Stop gain and in-frame insertion

-

Hemi

microcephaly, clinodactyly

Xiuhua Bozarth et al. (2018) [41]

94

F

-

ME-C

-

c.2179–2181del GTA

p.(V727del)

-

Hete

infantile spasms, nystagmus, strabismus

Leslie E. W. LaConte et al.(2018) [42]

95

F

12y

-

-

c.1556 T > C

p.(M519T),

Mis

-

MICPCH, gait ataxia, nystagmus

96

F

5y

-

-

c.1989G > A:

p.(G659D)

Mis

Hete

MICPCH strabismus

97

F

9y

-

-

c.626 T > C

p.(L209P)

-

-

MICPCH, ID, motor disability

Hiroaki Murakami et al. (2019) [43]

98

F

5y

-

-

c.2041C > T

p.(R681*)

Non

-

microcephaly, BCH, DD, hypotonia

Francesca Cristofoli et al. (2019) [44]

99

F

25y

Eur

-

c.1315–7 A > G

p.(M438-A 439 insH*)

Spl

-

ID, DD, dystonia, small cerebellum

100

F

21y

Eur

-

c.C109T

p.(Q37*)

Non

-

ID, DD, visual impairment

101

F

6y

Eur

-

c.T626C

p.(L209P)

Nonsy-nonym-ous

-

ID, DD, FD, hypotonia, nystagmus

102

F

17y

Eur

-

c.2302 + 1 G > A

p.(G741-H768 delinsD)

Spl

-

ID, DD, Visual impairment

ZHANG Yi, et al. (2019) [7]

103

M

3 m 27d

Chi

Ex20

c.1818_1821dup AACT

p.(T608Nfs* 16)

Frs

Hemi

MICPCH, DD, FD, hypertonia

This study

104

M

18d

Chi

Ex8

c.764G > A

p.(R255H)

Mis

Hemi

microcephaly, ID, DD, epilepsy, deafness

  1. Abbreviations: POP Population, LOC Location, AAC Amino acid change, TOV Type of variant, Geno Genotype, F Female, M Male, Ita Italian, A-A African-American, Fre French, Bri British, Ame American, Jap Japanese, Ger German, Ind Indian, MEC Mixed-European Caucasian, Eur European, Chi Chinese, Ex Exon, In Intron, Non Nonsense, Spl Splicing, Mis Missense, Frs Frameshift, Hete Heterozygous, Hemi Hemizygote, MICPCH Microcephaly with pontine and cerebellar hypoplasia, ID Intellectual disability, DD Developmental delay, FG FG syndrome, BCH Brain stem and cerebellar hypoplasia, PCH Pontine and cerebellar hypoplasia, FD Feeding difficulties, OS Ohtahara syndrome, TOF Tetralogy of Fallot, WS West syndrome, PHPV Persistent hyperplasia of primary vitreous, ASD Autism spectrum disorder