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Table 2 Genotypic frequencies in cases and controls

From: Study of variants associated with ventricular septal defects (VSDs) highlights the unique genetic structure of the Pakistani population

SNPs

Gene

Cases (n = 121)

Controls (n = 121)

P value

rs1017: NG_023040.1:g.16138A > T

ISL1

AA = 0.52

TA = 0.11

TT = 0.37

AA = 0.21

TA = 0.08

TT = 0.71

0.000215

rs36208048: NG_008732.1:g.3877C > A

VEGF

CC = 0.68

CA = 0.32

AA = 0.00

CC = 0.67

CA = 0.33

AA = 0.00

0.8921

rs7240256: NG_029226.1:g.23449 T > C

NFATc1

CC = 0.04

CT = 0.78

TT = 0.18

CC = 0.01

CT = 0.44

TT = 0.55

2.11 × 10–5

rs11067075 NG_007373.1:g.51682G > T

TBX5

GG = 0.21

GT = 0.70

TT = 0.09

GG = 0.56

GT = 0.36

TT = 0.08

1.6 × 10–4

NC_000006.10:g.126117350A > C(293A > C)

HEY2

AA = 1.0

AA = 1.0

––

rs1801133: NG_013351.1:g.14783C > T

MTHFR

CC = 0.25

CT = 0.62

TT = 0.13

CC = 0.88

CT = 0.10

TT = 0.02

2.09 × 10–9